Don't get me wrong, I'm not saying let Jones dictate his contract, but you would have to factor that into any potential transaction if he got moved to a different position considering he might be more likely to leave if he can't play CF. I'm mixed on the trade or not trade Jones, and I won't debate that here except to say the following. But yes, you can get a sense of whether Jones wants to re-sign here. If you are too far apart numbers wise, there might be no other options.
So hypothetically, say that we trade for Bourjos and put him in CF, and that makes Jones more likely to leave, would that make you not pull the trigger on the Bourjos trade?
Not at all. That plays into just what we should be doing. Bourjos is cheap and will be around for the next 5 years. He's a better defender than Jones with a little less offense (unless you think Jones is taking his offense to another level and I don't). The O's should be looking to deal Jones before next season, for players like Bourjos, young and cheap.